Package: viewpoly 0.4.1

Cristiane Taniguti

viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Authors:Cristiane Taniguti [aut, cre], Gabriel de Siqueira Gesteira [aut], Jeekin Lau [aut], Olivia Angelin-Bonnet [aut], Susan Thomson [ctb], Guilherme da Silva Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut]

viewpoly_0.4.1.tar.gz
viewpoly_0.4.1.zip(r-4.5)viewpoly_0.4.1.zip(r-4.4)viewpoly_0.4.1.zip(r-4.3)
viewpoly_0.4.1.tgz(r-4.4-any)viewpoly_0.4.1.tgz(r-4.3-any)
viewpoly_0.4.1.tar.gz(r-4.5-noble)viewpoly_0.4.1.tar.gz(r-4.4-noble)
viewpoly_0.4.1.tgz(r-4.4-emscripten)viewpoly_0.4.1.tgz(r-4.3-emscripten)
viewpoly.pdf |viewpoly.html
viewpoly/json (API)
NEWS

# Install 'viewpoly' in R:
install.packages('viewpoly', repos = c('https://polyploids.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mmollina/viewpoly/issues

On CRAN:

4.38 score 4 stars 2 scripts 186 downloads 1 exports 136 dependencies

Last updated 10 months agofrom:561ed5e0c2. Checks:OK: 3 ERROR: 1 NOTE: 3. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-winNOTENov 03 2024
R-4.5-linuxERRORNov 03 2024
R-4.4-winNOTENov 03 2024
R-4.4-macNOTENov 03 2024
R-4.3-winOKNov 03 2024
R-4.3-macOKNov 03 2024

Exports:run_app

Dependencies:abindaskpassattemptbackportsbase64encbitbit64bootbroombslibcachemcarcarDataclicliprcolorspacecommonmarkconfigcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDerivdigestdoBydplyrDTevaluatefansifarverfastmapfontawesomeFormulafsgenericsggnewscaleggplot2ggpubrggrepelggsciggsignifgluegolemgridExtragtableherehidecanhighrhmshtmltoolshtmlwidgetshttpuvhttridsisobandJBrowseRjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplotlyplyrpolynomprettyunitsprogresspromisespurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreactRreadrreshape2rlangrmarkdownrprojrootrstatixsassscalesshinyshinydashboardshinyjsshinythemesshinyWidgetssourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytextzdbutf8uuidvctrsviridisviridisLitevroomwithrxfunxtableyaml