Package: viewpoly 0.4.2

Cristiane Taniguti

viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Authors:Cristiane Taniguti [aut, cre], Gabriel de Siqueira Gesteira [aut], Jeekin Lau [aut], Olivia Angelin-Bonnet [aut], Susan Thomson [ctb], Guilherme da Silva Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut]

viewpoly_0.4.2.tar.gz
viewpoly_0.4.2.zip(r-4.7)viewpoly_0.4.2.zip(r-4.6)viewpoly_0.4.2.zip(r-4.5)
viewpoly_0.4.2.tgz(r-4.6-any)viewpoly_0.4.2.tgz(r-4.5-any)
viewpoly_0.4.2.tar.gz(r-4.7-any)viewpoly_0.4.2.tar.gz(r-4.6-any)
viewpoly_0.4.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
viewpoly/json (API)
NEWS

# Install 'viewpoly' in R:
install.packages('viewpoly', repos = c('https://polyploids.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mmollina/viewpoly/issues

On CRAN:

Conda:

4.15 score 7 stars 2 scripts 259 downloads 1 exports 147 dependencies

Last updated from:9694de1049. Checks:2 ERROR, 7 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR192
source / vignettesOK227
linux-release-x86_64ERROR191
macos-release-arm64OK159
macos-oldrel-arm64OK138
windows-develOK176
windows-releaseOK181
windows-oldrelOK174
wasm-releaseOK159

Exports:run_app

Dependencies:abindaskpassattemptbackportsbase64encbitbit64bootbroombslibcachemcarcarDataclicliprcolorspacecommonmarkconfigcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDerivdigestdoBydplyrDTevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgenericsggnewscaleggplot2ggpubrggrepelggsciggsignifgluegolemgridExtragtableherehidecanhighrhmshtmltoolshtmlwidgetshttpuvhttridsisobandJBrowseRjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelitedownlme4lmtestmagrittrmarkdownMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnumDerivopensslotelpbkrtestpillarpkgconfigplotlyplyrpolynomprettyunitsprogresspromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreactRreadrreformulasreshape2rlangrmarkdownrprojrootrstatixS7sassscalesshinyshinydashboardshinyjsshinythemesshinyWidgetssourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttimeDatetinytextzdburcautf8uuidvctrsviridisviridisLitevroomwithrxfunxtableyamlzoo