Package 'viewpoly'

Title: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species
Description: Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.
Authors: Cristiane Taniguti [aut, cre], Gabriel de Siqueira Gesteira [aut], Jeekin Lau [aut], Olivia Angelin-Bonnet [aut], Susan Thomson [ctb], Guilherme da Silva Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut]
Maintainer: Cristiane Taniguti <[email protected]>
License: GPL (>= 3)
Version: 0.4.1
Built: 2024-07-06 02:59:54 UTC
Source: https://github.com/mmollina/viewpoly

Help Index


Check hidecan inputs

Description

Check hidecan inputs

Usage

read_input_hidecan(input_list, func)

Arguments

input_list

shiny input result containing file path

func

hidecan read input function


Run the Shiny Application

Description

Run the Shiny Application

Usage

run_app(
  onStart = NULL,
  options = list(),
  enableBookmarking = NULL,
  uiPattern = "/",
  ...
)

Arguments

onStart

A function that will be called before the app is actually run. This is only needed for shinyAppObj, since in the shinyAppDir case, a global.R file can be used for this purpose.

options

Named options that should be passed to the runApp call (these can be any of the following: "port", "launch.browser", "host", "quiet", "display.mode" and "test.mode"). You can also specify width and height parameters which provide a hint to the embedding environment about the ideal height/width for the app.

enableBookmarking

Can be one of "url", "server", or "disable". The default value, NULL, will respect the setting from any previous calls to enableBookmarking(). See enableBookmarking() for more information on bookmarking your app.

uiPattern

A regular expression that will be applied to each GET request to determine whether the ui should be used to handle the request. Note that the entire request path must match the regular expression in order for the match to be considered successful.

...

arguments to pass to golem_opts. See '?golem::get_golem_options' for more details.