Package: diaQTL 1.13

Jeffrey Endelman

diaQTL: QTL Analysis in Diallel Populations

QTL analysis of diploid and autotetraploid diallel populations. Phenotypes are regressed on genotype probabilities, and the regression coefficients are random effects.

Authors:Jeffrey B. Endelman and Rodrigo R. Amadeu

diaQTL_1.13.tar.gz
diaQTL_1.13.zip(r-4.7)diaQTL_1.13.zip(r-4.6)diaQTL_1.13.zip(r-4.5)
diaQTL_1.13.tgz(r-4.6-any)diaQTL_1.13.tgz(r-4.5-any)
diaQTL_1.13.tar.gz(r-4.7-any)diaQTL_1.13.tar.gz(r-4.6-any)
diaQTL_1.13.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
diaQTL/json (API)
NEWS

# Install 'diaQTL' in R:
install.packages('diaQTL', repos = c('https://polyploids.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jendelman/diaqtl/issues

Datasets:
  • F1codes - Genotype codes for F1 populations
  • S1codes - Genotype codes for S1 populations

On CRAN:

Conda:

4.56 score 12 stars 5 scripts 25 exports 55 dependencies

Last updated from:9526a6d991. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK185
source / vignettesOK684
linux-release-x86_64OK180
macos-release-arm64OK132
macos-oldrel-arm64OK130
windows-develOK148
windows-releaseOK118
windows-oldrelOK126
wasm-releaseOK143

Exports:BayesCIconvert_mappolyconvert_onemapconvert_polyoriginconvert_rabbitdiallel_genodiallel_geno_phenoDIC_threshdiplo_freqdiplo_getfine_mapfitQTLget_maphaplo_clusterhaplo_freqhaplo_gethaplo_matchhaplo_plotIBDmatphased_parentsread_datascan1scan1_permutescan1_summaryset_params

Dependencies:arrangementsBGLRclicodacommonmarkcpp11curldplyrfarvergenericsggdendroggfittextggplot2gluegmpgridtextgtableisobandjpeglabelinglatticelifecyclelitedownmagrittrmarkdownMASSMatrixmgcvnlmepillarpkgconfigplyrpngpurrrR6RColorBrewerRcppreshape2rlangS7scalesscamshadesstringistringrtibbletidyrtidyselecttruncnormutf8vctrsviridisLitewithrxfunxml2

diaQTL Vignette

Rendered fromdiaQTL_vignette.Rmdusingknitr::rmarkdownon Jun 11 2026.

Last update: 2021-06-01
Started: 2021-04-27