Package: diaQTL 1.10

Jeffrey Endelman

diaQTL: QTL Analysis in Diallel Populations

QTL analysis of diploid and autotetraploid diallel populations. Phenotypes are regressed on genotype probabilities, and the regression coefficients are random effects.

Authors:Jeffrey B. Endelman and Rodrigo R. Amadeu

diaQTL_1.10.tar.gz
diaQTL_1.10.zip(r-4.5)diaQTL_1.10.zip(r-4.4)diaQTL_1.10.zip(r-4.3)
diaQTL_1.10.tgz(r-4.4-any)diaQTL_1.10.tgz(r-4.3-any)
diaQTL_1.10.tar.gz(r-4.5-noble)diaQTL_1.10.tar.gz(r-4.4-noble)
diaQTL_1.10.tgz(r-4.4-emscripten)diaQTL_1.10.tgz(r-4.3-emscripten)
diaQTL.pdf |diaQTL.html✨
diaQTL/json (API)
NEWS

# Install 'diaQTL' in R:
install.packages('diaQTL', repos = c('https://polyploids.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jendelman/diaqtl/issues

Datasets:
  • F1codes - Genotype codes for F1 populations
  • S1codes - Genotype codes for S1 populations

On CRAN:

4.04 score 11 stars 6 scripts 23 exports 56 dependencies

Last updated 11 months agofrom:fc40a9be6a. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-winOKNov 12 2024
R-4.5-linuxOKNov 12 2024
R-4.4-winOKNov 12 2024
R-4.4-macOKNov 12 2024
R-4.3-winOKNov 12 2024
R-4.3-macOKNov 12 2024

Exports:BayesCIconvert_mappolyconvert_onemapconvert_polyoriginconvert_rabbitDIC_threshdiplo_freqdiplo_getfine_mapfitQTLget_maphaplo_clusterhaplo_freqhaplo_gethaplo_matchhaplo_plotIBDmatphased_parentsread_datascan1scan1_permutescan1_summaryset_params

Dependencies:arrangementsBGLRclicodacolorspacecommonmarkcpp11curldplyrfansifarvergenericsggdendroggfittextggplot2gluegmpgridtextgtableisobandjpeglabelinglatticelifecyclemagrittrmarkdownMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrpngpurrrR6RColorBrewerRcppreshape2rlangscalesscamshadesstringistringrtibbletidyrtidyselecttruncnormutf8vctrsviridisLitewithrxfunxml2

diaQTL Vignette

Rendered fromdiaQTL_vignette.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2021-06-01
Started: 2021-04-27