Package: diaQTL 1.10

Jeffrey Endelman

diaQTL: QTL Analysis in Diallel Populations

QTL analysis of diploid and autotetraploid diallel populations. Phenotypes are regressed on genotype probabilities, and the regression coefficients are random effects.

Authors:Jeffrey B. Endelman and Rodrigo R. Amadeu

diaQTL_1.10.tar.gz
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diaQTL_1.10.tgz(r-4.5-any)diaQTL_1.10.tgz(r-4.4-any)diaQTL_1.10.tgz(r-4.3-any)
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diaQTL.pdf |diaQTL.html✨
diaQTL/json (API)
NEWS

# Install 'diaQTL' in R:
install.packages('diaQTL', repos = c('https://polyploids.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jendelman/diaqtl/issues

Datasets:
  • F1codes - Genotype codes for F1 populations
  • S1codes - Genotype codes for S1 populations

On CRAN:

4.04 score 11 stars 8 scripts 23 exports 56 dependencies

Last updated 1 years agofrom:fc40a9be6a. Checks:8 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 10 2025
R-4.5-winOKFeb 10 2025
R-4.5-macOKFeb 10 2025
R-4.5-linuxOKFeb 10 2025
R-4.4-winOKFeb 10 2025
R-4.4-macOKFeb 10 2025
R-4.3-winOKFeb 10 2025
R-4.3-macOKFeb 10 2025

Exports:BayesCIconvert_mappolyconvert_onemapconvert_polyoriginconvert_rabbitDIC_threshdiplo_freqdiplo_getfine_mapfitQTLget_maphaplo_clusterhaplo_freqhaplo_gethaplo_matchhaplo_plotIBDmatphased_parentsread_datascan1scan1_permutescan1_summaryset_params

Dependencies:arrangementsBGLRclicodacolorspacecommonmarkcpp11curldplyrfansifarvergenericsggdendroggfittextggplot2gluegmpgridtextgtableisobandjpeglabelinglatticelifecyclemagrittrmarkdownMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrpngpurrrR6RColorBrewerRcppreshape2rlangscalesscamshadesstringistringrtibbletidyrtidyselecttruncnormutf8vctrsviridisLitewithrxfunxml2

diaQTL Vignette

Rendered fromdiaQTL_vignette.Rmdusingknitr::rmarkdownon Feb 10 2025.

Last update: 2021-06-01
Started: 2021-04-27