Package: qtlpoly 0.2.4
qtlpoly: Random-Effect Multiple QTL Mapping in Autopolyploids
Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) <doi:10.1534/genetics.120.303080>.
Authors:
qtlpoly_0.2.4.tar.gz
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qtlpoly.pdf |qtlpoly.html✨
qtlpoly/json (API)
# Install 'qtlpoly' in R: |
install.packages('qtlpoly', repos = c('https://polyploids.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gabrielgesteira/qtlpoly/issues
Last updated 5 days agofrom:462b0fcad5. Checks:OK: 9. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 08 2024 |
R-4.5-win-x86_64 | OK | Nov 08 2024 |
R-4.5-linux-x86_64 | OK | Nov 08 2024 |
R-4.4-win-x86_64 | OK | Nov 08 2024 |
R-4.4-mac-x86_64 | OK | Nov 08 2024 |
R-4.4-mac-aarch64 | OK | Nov 08 2024 |
R-4.3-win-x86_64 | OK | Nov 08 2024 |
R-4.3-mac-x86_64 | OK | Nov 08 2024 |
R-4.3-mac-aarch64 | OK | Nov 08 2024 |
Exports:breeding_valuesfeimfit_modelfit_model2modify_qtlnull_modelnull_model2optimize_qtlpermutationsplot_profileplot_qtlplot_sintprofile_qtlqtl_effectsread_dataread_data2remimremim2search_qtlsimulate_qtl
Dependencies:abindapeaskpassbackportsbase64encbitbit64bitopsbootbroombslibcachemcarcarDatacheckmateclassclicliprclustercodetoolscolorspaceCompQuadFormcorrplotcowplotcpp11crayoncrosstalkcurldata.tabledendextendDerivdigestdoBydoParalleldotCall64dplyre1071ellipseevaluatefansifarverfastmapfieldsfontawesomeforcatsforeachforeignFormulafsgdatagenericsggplot2ggpubrggrepelggsciggsignifglmnetgluegridExtragtablegtoolshavenhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrisobanditeratorsjomojquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4magrittrmappolymapsMASSMatrixMatrixModelsmemoisememusemgcvmicemicrobenchmarkmimeminqamisc3dmitmlmodelrmunsellmvtnormnlmenloptrnnetnnlsnumDerivopensslordinalpanpbkrtestpermutepillarpinfsc50pkgconfigplot3DplotlyplotrixplyrpolynomprettyunitsprincurveprogresspromisesproxypurrrquadprogquantregR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRcppProgressRCurlreadrreshape2rlangRLRsimrmarkdownrpartrstatixrstudioapisassscalesshapesmacofspamSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytextzdbucminfutf8vcfRvctrsveganviridisviridisLitevroomweightswithrwordcloudxfunyamlzoo