Package: polyBreedR 0.47

Jeffrey Endelman

polyBreedR: Genomics-assisted breeding for polyploids (and diploids)

Genomics-assisted breeding for polyploids (and diploids)

Authors:Jeffrey B. Endelman

polyBreedR_0.47.tar.gz
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polyBreedR.pdf |polyBreedR.html✨
polyBreedR/json (API)
NEWS

# Install 'polyBreedR' in R:
install.packages('polyBreedR', repos = c('https://polyploids.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jendelman/polybreedr/issues

On CRAN:

Conda:

3.48 score 10 stars 6 scripts 21 exports 70 dependencies

Last updated 3 months agofrom:f3a4f9374a. Checks:1 ERROR, 8 WARNING. Indexed: no.

TargetResultLatest binary
Doc / VignettesFAILApr 03 2025
R-4.5-winWARNINGApr 03 2025
R-4.5-macWARNINGApr 03 2025
R-4.5-linuxWARNINGApr 03 2025
R-4.4-winWARNINGApr 03 2025
R-4.4-macWARNINGApr 03 2025
R-4.4-linuxWARNINGApr 03 2025
R-4.3-winWARNINGApr 03 2025
R-4.3-macWARNINGApr 03 2025

Exports:A_matADsplitarray2vcfcheck_ploidycheck_triodart2vcfG_matgbsgeno_callget_pedigreeGT2DSGvsAimputeimpute_L2Himpute_LAmadcmerge_imputereadXYupdate_aliasvcf2csvwrite_vcf

Dependencies:AGHmatrixapeassertthatcliclustercodetoolscolorspacecpp11data.tabledigestdoFuturedoRNGdplyrfansifarverforeachfuturefuture.applygenericsggplot2ggrepelglobalsgluegtableHaploSimisobanditeratorslabelinglatticelifecyclelistenvmagrittrMASSMatrixmemusemgcvmunsellnlmeparallellypedigreepermutepillarpinfsc50pkgconfigplyrpurrrR6randomForestRColorBrewerRcppRcppArmadilloreshapereshape2rlangrngtoolsrrBLUPscalesstringistringrtibbletidyrtidyselectupdogutf8vcfRvctrsveganviridisLitewithrzoo