Package: PolyHaplotyper 1.0.1

Roeland E. Voorrips

PolyHaplotyper: Assignment of Haplotypes Based on SNP Dosages in Diploids and Polyploids

Infer the genetic composition of individuals in terms of haplotype dosages for a haploblock, based on bi-allelic marker dosages, for any ploidy level. Reference: Voorrips and Tumino: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data. Submitted to BMC Bioinformatics (2021).

Authors:Roeland E. Voorrips

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33 exports 0.00 score 1 dependencies 143 downloads

Last updated 3 years agofrom:c733cbb692

Exports:allhapallHaplotypesbuild_ahccompletelistcalcMrkHaptablecalcStatisticscheckmrkDosagecompareHapMrkDosagescompareHapresultsexpandHapdosgetFSfreqsgetGameteFreqshapcomb2hapdoshapdos2hapcombhapdos2mrkdoshaploblock_df2listinferHaplotypesmake.Happyinf.inputmake.SATlotyper.inputmake.ShesisPlus.inputmergeReplicatesmrkdid2mrkdosmrkdos2mrkdidoverviewByFSpaddedpedigreeHapCheckpedigreeSim2PHread.Happyinf.outputread.SATlotyper.outputread.ShesisPlus.outputrun.SATlotypershowOneFStotHapcombCountusedhap

Dependencies:XML