Package: qtlpoly
Type: Package
Title: Random-Effect Multiple QTL Mapping in Autopolyploids
Version: 0.2.5
Authors@R: c(person(given = "Guilherme",
                    family = "da Silva Pereira",
                    role = "aut",
                    email = "gdasilv@ncsu.edu",
                    comment = c(ORCID="0000-0002-7106-8630")),
            person(given = "Marcelo",
                    family = "Mollinari",
                    role = "ctb",
                    email = "mmollin@ncsu.edu",
                    comment = c(ORCID="0000-0002-7001-8498")),
            person(given = "Gabriel",
                    family = "de Siqueira Gesteira",
                    role = c("ctb","cre"),
                    email = "gdesiqu@ncsu.edu",
                    comment = c(ORCID="0000-0002-4106-7346")),
            person(given = "Zhao-Bang",
                    family = "Zeng",
                    role = "ctb",
                    email = "szeng@ncsu.edu",
                    comment = c(ORCID="0000-0002-3115-1149")),
            person(given = "Long",
                    family = "Qu",
                    role = "ctb",
                    email = "rtistician@gmail.com",
                    comment = "R code for variance component tests using score statistics in R/varComp.R"),
            person(given = "Giovanny",
                    family = "Covarrubias-Pazaran",
                    role = "ctb",
                    email = "cova_ruber@live.com.mx",
                    comment = "C code for fitting mixed models with REML estimation in src/MNR.cpp")
                    )
Maintainer: Gabriel de Siqueira Gesteira <gdesiqu@ncsu.edu>
Description: Performs random-effect multiple interval mapping (REMIM)
        in full-sib families of autopolyploid species based on
        restricted maximum likelihood (REML) estimation and score
        statistics, as described in Pereira et al. (2020)
        <doi:10.1534/genetics.120.303080>.
License: GPL-3
URL: https://gabrielgesteira.github.io/QTLpoly/
BugReports: https://github.com/gabrielgesteira/QTLpoly/issues
Encoding: UTF-8
LazyData: TRUE
LazyDataCompression: xz
Depends: R (>= 4.0)
Imports: ggplot2 (>= 3.1), abind (>= 1.4), MASS (>= 7.3), gtools (>=
        3.9.2), CompQuadForm, Matrix, RLRsim, mvtnorm, nlme, quadprog,
        parallel, doParallel, foreach, stats, methods, mappoly, Rcpp
        (>= 0.12.19)
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Suggests: rmarkdown, devtools, knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://polyploids.r-universe.dev
Date/Publication: 2025-08-13 21:34:03 UTC
RemoteUrl: https://github.com/gabrielgesteira/QTLpoly
RemoteRef: HEAD
RemoteSha: db1991fa8e037ac3586c64024cf7f4ba76632c49
NeedsCompilation: yes
Packaged: 2026-07-09 06:14:00 UTC; root
Author: Guilherme da Silva Pereira [aut] (ORCID:
    <https://orcid.org/0000-0002-7106-8630>),
  Marcelo Mollinari [ctb] (ORCID:
    <https://orcid.org/0000-0002-7001-8498>),
  Gabriel de Siqueira Gesteira [ctb, cre] (ORCID:
    <https://orcid.org/0000-0002-4106-7346>),
  Zhao-Bang Zeng [ctb] (ORCID: <https://orcid.org/0000-0002-3115-1149>),
  Long Qu [ctb] (R code for variance component tests using score
    statistics in R/varComp.R),
  Giovanny Covarrubias-Pazaran [ctb] (C code for fitting mixed models
    with REML estimation in src/MNR.cpp)