# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "mappoly" in publications use:'
type: software
license: GPL-3.0-only
title: 'mappoly: Genetic Linkage Maps in Autopolyploids'
version: 0.4.1
doi: 10.1534/g3.119.400378
identifiers:
- type: doi
  value: 10.32614/CRAN.package.mappoly
abstract: Construction of genetic maps in autopolyploid full-sib populations. Uses
  pairwise recombination fraction estimation as the first source of information to
  sequentially position allelic variants in specific homologous chromosomes. For situations
  where pairwise analysis has limited power, the algorithm relies on the multilocus
  likelihood obtained through a hidden Markov model (HMM). For more detail, please
  see Mollinari and Garcia (2019) <https://doi.org/10.1534/g3.119.400378> and Mollinari
  et al. (2020) <https://doi.org/10.1534/g3.119.400620>.
authors:
- family-names: Mollinari
  given-names: Marcelo
  email: mmollin@ncsu.edu
  orcid: https://orcid.org/0000-0002-7001-8498
- family-names: Gesteira
  given-names: Gabriel
  email: gdesiqu@ncsu.edu
  orcid: https://orcid.org/0000-0002-4106-7346
- family-names: Taniguti
  given-names: Cristiane
  email: chtaniguti@tamu.edu
  orcid: https://orcid.org/0000-0002-2021-6883
- family-names: Lau
  given-names: Jeekin
  email: jzl0026@tamu.edu
  orcid: https://orcid.org/0000-0003-1114-6892
preferred-citation:
  type: article
  title: Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations
    with High Ploidy Level Using Hidden Markov Models
  authors:
  - family-names: Mollinari
    given-names: Marcelo
    email: mmollin@ncsu.edu
    orcid: https://orcid.org/0000-0002-7001-8498
  - family-names: Garcia
    given-names: A Augusto Franco
  journal: 'G3: Genes, Genomes, Genetics'
  year: '2019'
  volume: '9'
  issue: '10'
  url: https://doi.org/10.1534/g3.119.400378
  doi: 10.1534/g3.119.400378
  start: '3297'
  end: '3314'
repository: https://polyploids.r-universe.dev
repository-code: https://github.com/mmollina/MAPpoly
commit: 7bcae98fdeaeb4538a8f087cb7f92386399b9bdb
url: https://github.com/mmollina/MAPpoly
contact:
- family-names: Mollinari
  given-names: Marcelo
  email: mmollin@ncsu.edu
  orcid: https://orcid.org/0000-0002-7001-8498
references:
- type: article
  title: Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus
    Mapping
  authors:
  - family-names: Mollinari
    given-names: Marcelo
  - family-names: Olukolu
    given-names: Bode A.
  - family-names: Pereira
    given-names: Guilherme da S.
  - family-names: Khan
    given-names: Awais
  - family-names: Gemenet
    given-names: Dorcus
  - family-names: Yencho
    given-names: Craig
  - family-names: Zeng
    given-names: Zhao-Bang
  journal: 'G3: Genes, Genomes, Genetics'
  year: '2020'
  volume: '10'
  issue: '1'
  url: https://doi.org/10.1534/g3.119.400620
  doi: 10.1534/g3.119.400620
  start: '281'
  end: '292'