NEWS

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mappoly 0.4.1 (2024-03-06)

• Addressed the --use-LTO installation failure issue

mappoly 0.4.0 (2024-02-17)

• Functions to build maps in individual parents
• Functions to merge individual maps
• Imputation functions based on map
• Functions to edit order interactively
• Fix minor bugs

mappoly 0.3.3 (2023-01-05)

• Fix minor bugs

mappoly 0.3.2 (2022-12-02)

• Added function find_blocks
  • Added several utility functions
  • Update function filter_individuals
  • Update filtering graphics
  • Update some color schemes

mappoly 0.3.0 (2022-01-11)

• Added function est_pairwise_rf2 to avoid memory overflow in personal computers when estimating recombination fraction in large number of markers.
• Added Vignette
• Added function 'export_qtlpoly'
• Added function 'filter_individuals'
• Changed the name of function 'calc_homoprob' to 'calc_homologprob'

mappoly 0.2.3 (2021-04-20)

• Added function plot_GIC
• Updated functions est_rf_hmm_sequential and read_fitpoly
• Verification for high-prec system support
• Added LazyDataCompression: xz in DESCRIPTION file

mappoly 0.2.2

• Suggested packages are used conditionally, following §1.1.3.1 of 'Writing R Extensions'.

mappoly 0.2.1 (2020-11-23)

• Added estimation of two-point recombination fraction using genotype probabilities
  • Added 'read_fitpoly' function
  • New graphical feature in function 'rf_snp_filt'
  • Added option to plot large recombination fraction matrix using cell aggregation for a given order
  • Added estimation of map distance using the MDSMap package procedure (projects the MDS order onto a single dimension using principal curves)