Changes in version 2.14                         

    o   Minor update to set.threshold (when multiple p-values have the same q-value)

                        Changes in version 2.13                         

    o   added "cM" option to LD.plot

                        Changes in version 2.12                         

    o   minor fix to VCFdosage (n.minor=0) 

                        Changes in version 2.11                         

    o   Added argument max.loci to LD.plot

                        Changes in version 2.10                         

    o   Added default for max.geno.freq

    o   Default value for LOCO in set.K was removed to avoid confusion. User must specify.

    o   VCF2dosage function added

                        Changes in version 2.09                         

    o   Fixed error with model names in set.threshold

                        Changes in version 2.08                         

    o   Changed default to bp.window=NULL for get.QTL

                        Changes in version 2.07                         

    o   Fixed bug related to model names diplo-additive, diplo-general

                        Changes in version 2.06                         

    o   Implemented leave-one-chromosome-out

    o   Can make Manhattan plot for one chromosome

    o   Can filter output from get.QTL based on window

    o   qq.plot now displays results for each chromosome separately

    o   created LD.plot function

    o   updated vignette with new dataset

    o   use package Matrix to store symmetric matrices

                        Changes in version 2.05                         

    o   Added function fit.QTL

                        Changes in version 2.04                         

    o   Fixed case of 1 marker per chromosome

                        Changes in version 2.03                         

    o   Added horizontal line for the detection threshold in manhattan.plot

                        Changes in version 2.02                         

    o   Fractional values of allele dosage are now allowed for the additive model

    o   Modified permutation test to preserve relationship between fixed effects and phenotypes

                        Changes in version 2.01                         

    o   Added option for M.eff to set.threshold